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Supplemental Tables
Suppl. Table 1. The list of 156
statistically significant OPI clusters, their ortholog counts in S. cerevisiae and
human ortholog, and their P. f. protein counts that form within-cluster networks.
Suppl. Table 2. Yeast and human ortholog
evidences and protein interaction evidence for assigned and predicted gene ontology memberships of malaria genes.
Suppl. Table 3. The complete list of
malaria-related PubMed publications.
Suppl. Table 4. The complete list of
malaria genes cited in each malaria publication.
Table column descriptions (XLS file).
Additional gene-paper pairs used to constructure GO:PM15591202_Mer/Trp/Spo clusters (CSV file).
Figures (All)
OPI Clusters & Ortholog Support
Literature Mining Pipeline
Probability Density Distributions
P. k. Validation of Invasion Predictions
Selected Protein Networks
Additonal Data Files
Hierachical clustering results for 156 OPI clusters (Figure 1)
(.cdt and .gtr). (To visualize, please download and
install the JTreeView
program.)
Cluster membership for genes in the 156 clusters (CSV.gz file, 0.8MB)
Custom P. y. chip definition file (CSV file) and all probes on the array (GZip file).
Gene expression matrix for 14 P. yoelii samples (MOID, quantile normalized) (CSV file, 1.0MB).
Gene expression matrix for 40 P. falciparum samples (MOID, quantile normalized) (CSV file, 0.6MB).
Combined gene expression matrix for all 54 malaria samples (6592 P. f. and P. y. genes) (CSV.gz file, 0.9MB). Sample description file (CSV file).
A summary table for all P.f. genes containing information regarding their differential expression, P. yoelii ortholog, human orthologs, and OPI supports (CSV file, 0.5MB).
Raw expression data, Affymetrix CEL files (gzip compressed): 14 P. yoelii samples, 2 zygote & ookinete P. falciparum samples, P. falciparum gametocyte stage (Young et al.), other P. falciparum stages (Le Roch et al.).
74 Yeast samples collected at GNF used for ortholog analysis (CSV file, 2.2MB).
Human Tissue Atlas data collected at
GNF.
Hierachical clustering results for remaining gene groups.
Suppl. Table 1. The list of 156 statistically significant OPI clusters, their ortholog counts in S. cerevisiae and human ortholog, and their P. f. protein counts that form within-cluster networks.
Suppl. Table 2. Yeast and human ortholog evidences and protein interaction evidence for assigned and predicted gene ontology memberships of malaria genes.
Suppl. Table 3. The complete list of malaria-related PubMed publications.
Suppl. Table 4. The complete list of malaria genes cited in each malaria publication.
Table column descriptions (XLS file).
Additional gene-paper pairs used to constructure GO:PM15591202_Mer/Trp/Spo clusters (CSV file).
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